Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs74693089 chr13:108893661 A/G 1.07E-5 362 20.45 18.47 6.47 KM Plot
LIHC rs74693861 chr2:37131890 G/C 8.8E-6 368 20.45 12.17 8.73 KM Plot
LIHC rs74720054 chr2:37089441 G/C 1.66E-5 368 20.45 12.17 8.73 KM Plot
LIHC rs74757210 chr2:37233280 TA/T 2.31E-5 365 20.27 14.9 8.73 KM Plot
LIHC rs74862732 chr11:107173483 T/G 8.11E-6 365 19.83 18.78 1.87 KM Plot
LIHC rs74908176 chr6:169936353 G/A 8.52E-6 365 19.83 19.13 4.27 KM Plot
LIHC rs74939138 chr14:73411045 C/A 2.52E-6 363 20.7 13.17 8.73 KM Plot
LIHC rs749749 chr15:40350131 A/G 7.36E-5 368 16.9 21.47 17.02 KM Plot
LIHC rs75031110 chr14:73388687 A/G 7.54E-6 362 20.27 13.57 8.73 KM Plot
LIHC rs75129724 chr6:143242882 T/A 4.75E-5 365 20.03 18.48 3.37 KM Plot
LIHC rs75145937 chr11:96723251 A/G 1.55E-5 365 20.17 18.4 2.63 KM Plot
LIHC rs75212419 chr2:37144356 G/GT 1.04E-5 367 20.5 12.17 8.73 KM Plot
LIHC rs75276278 chr14:56024341 C/T 8.58E-9 366 18.87 27.45 1.13 KM Plot
LIHC rs75609747 chr3:7931053 A/C 1.88E-7 368 19.17 23.18 3.03 KM Plot
LIHC rs75635648 chr2:37089107 C/G 1.66E-5 368 20.45 12.17 8.73 KM Plot